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CFDE Pop-Up: LINCS - Shared screen with speaker view
Marisa Lim
23:58
If you have any questions, post them to the zoom Q&A box! :)
Daniel Clarke
25:32
https://appyters.maayanlab.cloud/#/
Sangeeta Shukla
30:40
Can you please scroll up and show all the selected options again?
Sangeeta Shukla
31:04
Or is there a way to review all selected options before running the pipeline?
Avi Ma'ayan
31:54
No, but this is a good idea.
Abhijna Parigi
41:27
@jonathan: Answer from Avi Ma’ayan is that there is no specific criteria for metadata. it just needs to be a text file with matching labels
Marisa Lim
47:05
We’ll share a list of these links after the pop-up!
Saranya Canchi
56:07
What are the recommendations for best practices for parameter settings for all of these analysis ? Is it best to resort to default values ?
Saranya Canchi
01:00:20
Thank you Sherry and Avi! Can you post links to documentation that describe the different appyter parameters ?
Sherry Xie
01:01:52
@Saranya I think ideally the parameters would be adjusted based on the input data and the purpose of the analysis, but the default settings are usually based on common/best practice parameters.
Marisa Lim
01:08:35
Creating appyters docs: https://appyters.maayanlab.cloud/#/creating-appyters/
Saranya Canchi
01:10:41
Reposting response for all: @Saranya we do not have a specific place with the documentation for all the options. The input forms contain "more information icons" that looks like this: (?). In there, there is some info about each option.
Saranya Canchi
01:10:52
Thank you Avi!
Saranya Canchi
01:16:45
What local setup would one need in addition to having python to run appyters ?
Saranya Canchi
01:18:40
Thank you Daniel!
Saranya Canchi
01:18:52
What is the upper limit on size of the datasets ?
Saranya Canchi
01:20:17
Wow!