CFDE Pop-Up: LINCS - Shared screen with speaker view
Who can see your viewing activity?
If you have any questions, post them to the zoom Q&A box! :)
Can you please scroll up and show all the selected options again?
Or is there a way to review all selected options before running the pipeline?
No, but this is a good idea.
@jonathan: Answer from Avi Ma’ayan is that there is no specific criteria for metadata. it just needs to be a text file with matching labels
We’ll share a list of these links after the pop-up!
What are the recommendations for best practices for parameter settings for all of these analysis ? Is it best to resort to default values ?
Thank you Sherry and Avi! Can you post links to documentation that describe the different appyter parameters ?
@Saranya I think ideally the parameters would be adjusted based on the input data and the purpose of the analysis, but the default settings are usually based on common/best practice parameters.
Creating appyters docs: https://appyters.maayanlab.cloud/#/creating-appyters/
Reposting response for all: @Saranya we do not have a specific place with the documentation for all the options. The input forms contain "more information icons" that looks like this: (?). In there, there is some info about each option.
Thank you Avi!
What local setup would one need in addition to having python to run appyters ?
Thank you Daniel!
What is the upper limit on size of the datasets ?